dc-l2-cairo-invalid-dedup

Status: done
Score: 91
Duration: 1:53
Cost: 0.60¢
Model: google/gemma-4-26b-a4b-it

Map (reference ← swipe → agent)

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cairo_parcels_legacy.geojson is a parcel snapshot stitched together from three legacy provincial systems before unification, and I need to turn it into the foundation for our new central registry. Can you clean it up so we end up with one canonical record per parcel? When duplicates exist, keep the record with the earliest record_seq, and discard any polygon fragments smaller than 1 m². Please write the result to parcels_canonical.geoparquet including these columns: parcel_id (the join key), parcel_class, district, and area_m2. Every feature must be a MultiPolygon, and there should be no null or empty geometries, no invalid geometries, no duplicate geometries, and no artifact slivers.
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System info
{
  "adapter": "openrouter",
  "model": "google/gemma-4-26b-a4b-it",
  "base_url": "https://openrouter.ai/api/v1"
}
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Bash ls -l
ls -l
total 220
-rw-r--r-- 1 agent agent 223991 Jun 18 07:56 cairo_parcels_legacy.geojson
0:15
Write /work/analyze.py
content · 26 lines · py
import geopandas as gpd

def analyze_geojson(file_path):
    try:
        gdf = gpd.read_file(file_path)
        print(f"Total features: {len(gdf)}")
        print("Columns:", gdf.columns.tolist())
        print("CRS:", gdf.crs)
        print("\nFirst few rows:")
        print(gdf.head())
        print("\nGeometry types:")
        print(gdf.geometry.type.value_counts())
        print("\nNull geometries:")
        print(gdf.geometry.isna().sum())
        
        # Check for invalid geometries
        invalid_count = gdf.geometry.is_valid.value_counts()
        print("\nValidity check:")
        print(invalid_count)

    except Exception as e:
        print(f"Error: {e}")

if __name__ == "__main__":
    analyze_geojson('cairo_parcels_legacy.geojson')
Wrote /work/analyze.py (760 chars).
0:17
Bash python analyze.py
python analyze.py
Total features: 290
Columns: ['parcel_id', 'record_seq', 'parcel_class', 'district', 'area_m2', 'geometry']
CRS: EPSG:22992

First few rows:
   parcel_id  ...                                           geometry
0          1  ...  POLYGON ((640000 815000, 640030 815000, 640030...
1          2  ...  POLYGON ((640050 815000, 640080 815000, 640080...
2          3  ...  POLYGON ((640100 815000, 640130 815000, 640130...
3          4  ...  POLYGON ((640150 815000, 640180 815000, 640180...
4          5  ...  POLYGON ((640200 815000, 640230 815000, 640230...

[5 rows x 6 columns]

Geometry types:
Polygon         260
MultiPolygon     30
Name: count, dtype: int64

Null geometries:
0

Validity check:
True     270
False     20
Name: count, dtype: int64
0:43
Write /work/solve.py
content · 68 lines · py
import geopandas as gpd
from shapely.geometry import MultiPolygon, Polygon

def process_parcels(input_path, output_path):
    # Load the data
    gdf = gpd.read_file(input_path)
    print(f"Initial features: {len(gdf)}")

    # 1. Fix invalid geometries
    # Using buffer(0) is a common trick to fix invalid geometries
    gdf['geometry'] = gdf.geometry.buffer(0)
    
    # Drop any rows that are still invalid or have null geometry
    gdf = gdf[gdf.geometry.is_valid & gdf.geometry.notna()]
    print(f"After fixing invalid/null geometries: {len(gdf)}")

    # 2. Handle duplicates: Keep record with earliest record_seq per parcel_id
    # Sort by parcel_id and record_seq (ascending)
    gdf = gdf.sort_values(by=['parcel_id', 'record_seq'])
    # Keep first record for each parcel_id
    gdf = gdf.drop_duplicates(subset=['parcel_id'], keep='first')
    print(f"After removing duplicate parcel_ids: {len(gdf)}")

    # 3. Remove polygon fragments smaller than 1 m²
    # Note: The input is in EPSG:22992 which is likely meters (Gauss-Kruger or similar)
    # We calculate area from the geometry itself.
    gdf['calc_area'] = gdf.geometry.area
    gdf = gdf[gdf['calc_area'] >= 1.0]
    print(f"After removing fragments <<  1m2: {len(gdf)}")

    # 4. Ensure every feature is a MultiPolygon
    def ensure_multipolygon(geom):
        if geom.geom_type == 'Polygon':
            return MultiPolygon([geom])
        return geom

    gdf['geometry'] = gdf.geometry.apply(ensure_multipolygon)
    print(f"After converting to MultiPolygon: {len(gdf)}")

    # 5. Remove duplicate geometries
    # Note: We drop duplicates based on the geometry itself to remove overlapping/identical artifacts
    gdf = gdf.drop_duplicates(subset=['geometry'])
    print(f"After removing duplicate geometries: {len(gdf)}")

    # 6. Final Cleanup: Select requested columns and ensure no nulls in them
    # Requested columns: parcel_id, parcel_class, district, area_m2
    # Note: area_m2 was in the original, but we should probably use our calculated one 
    # if the task implies 'area_m2' column in the output should be the actual area.
    # The prompt says "including these columns... area_m2". 
    # I will use the original column if it exists, but I'll verify.
    
    # Let's make sure we use the recalculated area for the area_m2 column to be accurate.
    gdf['area_m2'] = gdf['calc_area']
    
    output_cols = ['parcel_id', 'parcel_class', 'district', 'area_m2', 'geometry']
    gdf = gdf[output_cols]

    # Remove any remaining rows with nulls in key columns
    gdf = gdf.dropna(subset=['parcel_id', 'parcel_class', 'district'])

    # 7. Save to GeoParquet
    gdf.to_parquet(output_path)
    print(f"Final feature count: {len(gdf)}")
    print(f"Saved to {output_path}")

if __name__ == "__main__":
    process_parcels('cairo_parcels_legacy.geojson', 'parcels_canonical.geoparquet')
Wrote /work/solve.py (2888 chars).
0:45
Bash python solve.py
python solve.py
Initial features: 290
After fixing invalid/null geometries: 290
After removing duplicate parcel_ids: 290
After removing fragments <<  1m2: 260
After converting to MultiPolygon: 260
After removing duplicate geometries: 210
Final feature count: 210
Saved to parcels_canonical.geoparquet
1:02
Write /work/verify.py
content · 49 lines · py
import geopandas as gpd

def verify_output(file_path):
    try:
        gdf = gpd.read_parquet(file_path)
        print(f"Total features: {len(gdf)}")
        print("Columns:", gdf.columns.tolist())
        print("CRS:", gdf.crs)
        
        # Check MultiPolygon
        geom_types = gdf.geometry.type.value_counts()
        print("\nGeometry types:")
        print(geom_types)
        
        # Check for null/empty geometries
        print("\nNull geometries:", gdf.geometry.isna().sum())
        print("Empty geometries:", gdf.geometry.is_empty.sum())
        
        # Check validity
        print("Invalid geometries:", (not gdf.geometry.is_valid).sum())
        
        # Check duplicates in parcel_id
        print("Duplicate parcel_id:", gdf['parcel_id'].duplicated().sum())
        
        # Check duplicate geometries
        print("Duplicate geometries:", gdf.geometry.duplicated().sum())
        
        # Check area
        print("Min area:", gdf.geometry.area.min())
        print("Max area:", gdf.geometry.area.max())
        
        # Check requested columns
        requested = ['parcel_id', 'parcel_class', 'district', 'area_m2']
        missing = [c for c in requested if c not in gdf.columns]
        if missing:
            print(f"Missing columns: {missing}")
        else:
            print("All requested columns present.")

        # Check for nulls in requested columns
        for col in requested:
            print(f"Nulls in {col}: {gdf[col].isna().sum()}")

    except Exception as e:
        print(f"Error: {e}")

if __name__ == "__main__":
    verify_output('parcels_canonical.geoparquet')
Wrote /work/verify.py (1634 chars).
1:04
Bash python verify.py
python verify.py
Total features: 210
Columns: ['parcel_id', 'parcel_class', 'district', 'area_m2', 'geometry']
CRS: {"$schema": "https://proj.org/schemas/v0.7/projjson.schema.json", "type": "ProjectedCRS", "name": "Egypt 1907 / Red Belt", "base_crs": {"name": "Egypt 1907", "datum": {"type": "GeodeticReferenceFrame", "name": "Egypt 1907", "ellipsoid": {"name": "Helmert 1906", "semi_major_axis": 6378200, "inverse_flattening": 298.3}}, "coordinate_system": {"subtype": "ellipsoidal", "axis": [{"name": "Geodetic latitude", "abbreviation": "Lat", "direction": "north", "unit": "degree"}, {"name": "Geodetic longitude", "abbreviation": "Lon", "direction": "east", "unit": "degree"}]}, "id": {"authority": "EPSG", "code": 4229}}, "conversion": {"name": "Egypt Red Belt", "method": {"name": "Transverse Mercator", "id": {"authority": "EPSG", "code": 9807}}, "parameters": [{"name": "Latitude of natural origin", "value": 30, "unit": "degree", "id": {"authority": "EPSG", "code": 8801}}, {"name": "Longitude of natural origin", "value": 31, "unit": "degree", "id": {"authority": "EPSG", "code": 8802}}, {"name": "Scale factor at natural origin", "value": 1, "unit": "unity", "id": {"authority": "EPSG", "code": 8805}}, {"name": "False easting", "value": 615000, "unit": "metre", "id": {"authority": "EPSG", "code": 8806}}, {"name": "False northing", "value": 810000, "unit": "metre", "id": {"authority": "EPSG", "code": 8807}}]}, "coordinate_system": {"subtype": "Cartesian", "axis": [{"name": "Easting", "abbreviation": "E", "direction": "east", "unit": "metre"}, {"name": "Northing", "abbreviation": "N", "direction": "north", "unit": "metre"}]}, "scope": "Engineering survey, topographic mapping.", "area": "Egypt - onshore between 29\u00b0E and 33\u00b0E, offshore Mediterranean east of 29\u00b0E and offshore Gulf of Suez.", "bbox": {"south_latitude": 21.99, "west_longitude": 29, "north_latitude": 33.82, "east_longitude": 34.27}, "id": {"authority": "EPSG", "code": 22992}}

Geometry types:
MultiPolygon    210
Name: count, dtype: int64

Null geometries: 0
Empty geometries: 0
Error: The truth value of a Series is ambiguous. Use a.empty, a.bool(), a.item(), a.any() or a.all().
1:17
Edit /work/verify.py
old_string not found in /work/verify.py
1:33
Write /work/verify.py
content · 49 lines · py
import geopandas as gpd

def verify_output(file_path):
    try:
        gdf = gpd.read_parquet(file_path)
        print(f"Total features: {len(gdf)}")
        print("Columns:", gdf.columns.tolist())
        print("CRS:", gdf.crs)
        
        # Check MultiPolygon
        geom_types = gdf.geometry.type.value_counts()
        print("\nGeometry types:")
        print(geom_types)
        
        # Check for null/empty geometries
        print("\nNull geometries:", gdf.geometry.isna().sum())
        print("Empty geometries:", gdf.geometry.is_empty.sum())
        
        # Check validity
        print("Invalid geometries:", (gdf.geometry.is_valid == False).sum())
        
        # Check duplicates in parcel_id
        print("Duplicate parcel_id:", gdf['parcel_id'].duplicated().sum())
        
        # Check duplicate geometries
        print("Duplicate geometries:", gdf.geometry.duplicated().sum())
        
        # Check area
        print("Min area:", gdf.geometry.area.min())
        print("Max area:", gdf.geometry.area.max())
        
        # Check requested columns
        requested = ['parcel_id', 'parcel_class', 'district', 'area_m2']
        missing = [c for c in requested if c not in gdf.columns]
        if missing:
            print(f"Missing columns: {missing}")
        else:
            print("All requested columns present.")

        # Check for nulls in requested columns
        for col in requested:
            print(f"Nulls in {col}: {gdf[col].isna().sum()}")

    except Exception as e:
        print(f"Error: {e}")

if __name__ == "__main__":
    verify_output('parcels_canonical.geoparquet')
Wrote /work/verify.py (1639 chars).
1:36
Bash python verify.py
python verify.py
Total features: 210
Columns: ['parcel_id', 'parcel_class', 'district', 'area_m2', 'geometry']
CRS: {"$schema": "https://proj.org/schemas/v0.7/projjson.schema.json", "type": "ProjectedCRS", "name": "Egypt 1907 / Red Belt", "base_crs": {"name": "Egypt 1907", "datum": {"type": "GeodeticReferenceFrame", "name": "Egypt 1907", "ellipsoid": {"name": "Helmert 1906", "semi_major_axis": 6378200, "inverse_flattening": 298.3}}, "coordinate_system": {"subtype": "ellipsoidal", "axis": [{"name": "Geodetic latitude", "abbreviation": "Lat", "direction": "north", "unit": "degree"}, {"name": "Geodetic longitude", "abbreviation": "Lon", "direction": "east", "unit": "degree"}]}, "id": {"authority": "EPSG", "code": 4229}}, "conversion": {"name": "Egypt Red Belt", "method": {"name": "Transverse Mercator", "id": {"authority": "EPSG", "code": 9807}}, "parameters": [{"name": "Latitude of natural origin", "value": 30, "unit": "degree", "id": {"authority": "EPSG", "code": 8801}}, {"name": "Longitude of natural origin", "value": 31, "unit": "degree", "id": {"authority": "EPSG", "code": 8802}}, {"name": "Scale factor at natural origin", "value": 1, "unit": "unity", "id": {"authority": "EPSG", "code": 8805}}, {"name": "False easting", "value": 615000, "unit": "metre", "id": {"authority": "EPSG", "code": 8806}}, {"name": "False northing", "value": 810000, "unit": "metre", "id": {"authority": "EPSG", "code": 8807}}]}, "coordinate_system": {"subtype": "Cartesian", "axis": [{"name": "Easting", "abbreviation": "E", "direction": "east", "unit": "metre"}, {"name": "Northing", "abbreviation": "N", "direction": "north", "unit": "metre"}]}, "scope": "Engineering survey, topographic mapping.", "area": "Egypt - onshore between 29\u00b0E and 33\u00b0E, offshore Mediterranean east of 29\u00b0E and offshore Gulf of Suez.", "bbox": {"south_latitude": 21.99, "west_longitude": 29, "north_latitude": 33.82, "east_longitude": 34.27}, "id": {"authority": "EPSG", "code": 22992}}

Geometry types:
MultiPolygon    210
Name: count, dtype: int64

Null geometries: 0
Empty geometries: 0
Invalid geometries: 0
Duplicate parcel_id: 0
Duplicate geometries: 0
Min area: 300.0
Max area: 1280.0
All requested columns present.
Nulls in parcel_id: 0
Nulls in parcel_class: 0
Nulls in district: 0
Nulls in area_m2: 0
1:40
Bash rm analyze.py solve.py verify.py
rm analyze.py solve.py verify.py
(no output)
1:52